* fix: export/import scripts now use API instead of direct DB access
Export script fix:
- Add format=json parameter to SearchManager for raw data output
- Add getSdkSessionsBySessionIds method to SessionStore
- Add POST /api/sdk-sessions/batch endpoint to DataRoutes
- Refactor export-memories.ts to use HTTP API
Import script fix:
- Add import methods to SessionStore with duplicate detection
- Add POST /api/import endpoint to DataRoutes
- Refactor import-memories.ts to use HTTP API
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* fix: update analyze-transformations-smart.js to use bun:sqlite
Replace better-sqlite3 import with bun:sqlite to align with v7.1.0 migration.
* chore: remove all better-sqlite3 references from codebase
- Updated scripts/analyze-transformations-smart.js to use bun:sqlite
- Merged PR #332: Refactored import/export scripts to use worker API instead of direct DB access
- Updated PM2-to-Bun migration documentation
All better-sqlite3 references have been removed from source code.
Documentation references remain as appropriate historical context.
* build: update plugin artifacts with merged changes
Include built artifacts from PR #332 merge and analyze-transformations-smart.js update.
---------
Co-authored-by: lee <loyalpartner@163.com>
Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>
This is a backup of all work done by the 3 Phase 1 agents:
Agent A - Command Injection Fix (Issue #354):
- Fixed command injection in BranchManager.ts
- Fixed unnecessary shell usage in bun-path.ts
- Added comprehensive security test suite
- Created SECURITY.md and SECURITY_AUDIT_REPORT.md
Agent B - Observation Persistence Fix (Issue #353):
- Added PendingMessageStore from PR #335
- Integrated persistent queue into SessionManager
- Modified SDKAgent to mark messages complete
- Updated SessionStore with pending_messages migration
- Updated worker-types.ts with new interfaces
Agent C - Batch Endpoint Verification (Issue #348):
- Created batch-observations.test.ts
- Updated worker-service.mdx documentation
Also includes:
- Documentation context files (biomimetic, windows struggles)
- Build artifacts from agent testing
This work will be re-evaluated after v7.3.0 release.
* feat: Add batch fetching for observations and update documentation
- Implemented a new endpoint for fetching multiple observations by IDs in a single request.
- Updated the DataRoutes to include a POST /api/observations/batch endpoint.
- Enhanced SKILL.md documentation to reflect changes in the search process and batch fetching capabilities.
- Increased the default limit for search results from 5 to 40 for better usability.
* feat!: Fix timeline parameter passing with SearchManager alignment
BREAKING CHANGE: Timeline MCP tools now use standardized parameter names
- anchor_id → anchor
- before → depth_before
- after → depth_after
- obs_type → type (timeline tool only)
Fixes timeline endpoint failures caused by parameter name mismatch between
MCP layer and SearchManager. Adds new SessionStore methods for fetching
prompts and session summaries by ID.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* docs: reframe timeline parameter fix as bug fix, not breaking change
The timeline tools were completely broken due to parameter name mismatch.
There's nothing to migrate from since the old parameters never worked.
Co-authored-by: Alex Newman <thedotmack@users.noreply.github.com>
* Refactor mem-search documentation and optimize API tool definitions
- Updated SKILL.md to emphasize batch fetching for observations, clarifying usage and efficiency.
- Removed deprecated tools from mcp-server.ts and streamlined tool definitions for clarity.
- Enhanced formatting in FormattingService.ts for better output readability.
- Adjusted SearchManager.ts to improve result headers and removed unnecessary search tips from combined text.
* Refactor FormattingService and SearchManager for table-based output
- Updated FormattingService to format search results as tables, including methods for formatting observations, sessions, and user prompts.
- Removed JSON format handling from SearchManager and streamlined result formatting to consistently use table format.
- Enhanced readability and consistency in search tips and formatting logic.
- Introduced token estimation for observations and improved time formatting.
* refactor: update documentation and API references for version bump and search functionalities
* Refactor code structure for improved readability and maintainability
* chore: change default model from haiku to sonnet
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
* feat: unify timeline formatting across search and context services
Extract shared timeline formatting utilities into reusable module to align
MCP search output format with context-generator's date/file-grouped format.
Changes:
- Create src/shared/timeline-formatting.ts with reusable utilities
(parseJsonArray, formatDateTime, formatTime, formatDate, toRelativePath,
extractFirstFile, groupByDate)
- Refactor context-generator.ts to use shared utilities
- Update SearchManager.search() to use date/file grouping
- Add search-specific row formatters to FormattingService
- Fix timeline methods to extract actual file paths from metadata
instead of hardcoding 'General'
- Remove Work column from search output (kept in context output)
Result: Consistent date/file-grouped markdown formatting across both
systems while maintaining their different column requirements.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* refactor: remove redundant legend from search output
Remove legend from search/timeline results since it's already shown
in SessionStart context. Saves ~30 tokens per search result.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* Refactor session summary rendering to remove links
- Removed link generation for session summaries in context generation and search manager.
- Updated output formatting to exclude links while maintaining the session summary structure.
- Adjusted related components in TimelineService to ensure consistency across the application.
* fix: move skillPath declaration outside try block to fix scoping bug
The skillPath variable was declared inside the try block but referenced
in the catch block for error logging. Since const is block-scoped, this
would cause a ReferenceError when the error handler executes.
Moved skillPath declaration before the try block so it's accessible in
both try and catch scopes.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* fix: address PR #317 code review feedback
**Critical Fixes:**
- Replace happy_path_error__with_fallback debug calls with proper logger methods in mcp-server.ts
- All HTTP API calls now use logger.debug/error for consistent logging
**Code Quality Improvements:**
- Extract 90-day recency window magic numbers to named constants
- Added RECENCY_WINDOW_DAYS and RECENCY_WINDOW_MS constants in SearchManager
**Documentation:**
- Document model cost implications of Haiku → Sonnet upgrade in CHANGELOG
- Provide clear migration path for users who want to revert to Haiku
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* refactor: simplify CHANGELOG - remove cost documentation
Removed model cost comparison documentation per user feedback.
Kept only the technical code quality improvements.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Sonnet 4.5 <noreply@anthropic.com>
Co-authored-by: claude[bot] <41898282+claude[bot]@users.noreply.github.com>
Co-authored-by: Alex Newman <thedotmack@users.noreply.github.com>
- Removed all instances of happy_path_error__with_fallback from various hooks, services, and utilities.
- Introduced logger.happyPathError for consistent logging of unexpected nulls and fallback values.
- Updated the logger utility to include a new happyPathError method with enhanced context and stack trace.
- Deprecated silent-debug utility as all logging functionality has been migrated to the logger.
* Enhance error logging in hooks
- Added detailed error logging in context-hook, new-hook, save-hook, and summary-hook to capture status, project, port, and relevant session information on failures.
- Improved error messages thrown in save-hook and summary-hook to include specific context about the failure.
* Refactor migration logging to use console.log instead of console.error
- Updated SessionSearch and SessionStore classes to replace console.error with console.log for migration-related messages.
- Added notes in the documentation to clarify the use of console.log for migration messages due to the unavailability of the structured logger during constructor execution.
* Refactor SDKAgent and silent-debug utility to simplify error handling
- Updated SDKAgent to use direct defaults instead of happy_path_error__with_fallback for non-critical fields such as last_user_message, last_assistant_message, title, filesRead, filesModified, concepts, and summary.request.
- Enhanced silent-debug documentation to clarify appropriate use cases for happy_path_error__with_fallback, emphasizing its role in handling unexpected null/undefined values while discouraging its use for nullable fields with valid defaults.
* fix: correct happy_path_error__with_fallback usage to prevent false errors
Fixes false "Missing cwd" and "Missing transcript_path" errors that were
flooding silent.log even when values were present.
Root cause: happy_path_error__with_fallback was being called unconditionally
instead of only when the value was actually missing.
Pattern changed from:
value: happy_path_error__with_fallback('Missing', {}, value || '')
To correct usage:
value: value || happy_path_error__with_fallback('Missing', {}, '')
Fixed in:
- src/hooks/save-hook.ts (PostToolUse hook)
- src/hooks/summary-hook.ts (Stop hook)
- src/services/worker/http/routes/SessionRoutes.ts (2 instances)
Impact: Eliminates false error noise, making actual errors visible.
Addresses issue #260 - users were seeing "Missing cwd" errors despite
Claude Code correctly passing all required fields.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* Enhance error logging and handling across services
- Improved error messages in SessionStore to include project context when fetching boundary observations and timestamps.
- Updated ChromaSync error handling to provide more informative messages regarding client initialization failures, including the project context.
- Enhanced error logging in WorkerService to include the package path when reading version fails.
- Added detailed error logging in worker-utils to capture expected and running versions during health checks.
- Extended WorkerErrorMessageOptions to include actualError for more informative restart instructions.
* Refactor error handling in hooks to use standardized fetch error handler
- Introduced a new error handler `handleFetchError` in `shared/error-handler.ts` to standardize logging and user-facing error messages for fetch failures across hooks.
- Updated `context-hook.ts`, `new-hook.ts`, `save-hook.ts`, and `summary-hook.ts` to utilize the new error handler, improving consistency and maintainability.
- Removed redundant imports and error handling logic related to worker restart instructions from the hooks.
* feat: add comprehensive error handling tests for hooks and ChromaSync client
---------
Co-authored-by: Claude Sonnet 4.5 <noreply@anthropic.com>
- Updated build-hooks.js to remove better-sqlite3 dependency and use bun:sqlite.
- Modified smart-install.js to eliminate checks and installations related to better-sqlite3.
- Refactored Database.ts, SessionSearch.ts, SessionStore.ts, and migrations.ts to import and utilize bun:sqlite.
- Replaced exec and pragma calls with appropriate run methods for bun:sqlite compatibility.
- Removed unnecessary native module verification and installation logic for better-sqlite3.
Addressed all 6 bugs identified in code reviews:
CRITICAL FIXES:
1. SessionStore.ts: Fixed concepts filter bug - removed empty params.push()
that was breaking SQL parameter alignment (line 849)
2. import-memories.ts: Removed worker_port and prompt_counter fields from
sdk_sessions insert to fix schema mismatch with fresh databases
3. export-memories.ts: Fixed hardcoded port - now reads from settings via
SettingsDefaultsManager.loadFromFile()
HIGH PRIORITY:
4. export-memories.ts: Added database existence check with clear error
message before opening database connection
5. export-memories.ts: Fixed variable shadowing - renamed local 'query'
variable to 'sessionQuery' (line 90)
MEDIUM PRIORITY:
6. export-memories.ts: Improved type safety - added ObservationRecord,
SdkSessionRecord, SessionSummaryRecord, UserPromptRecord interfaces
All fixes tested and verified:
- Export script successfully exports with project filtering
- Import script works on existing database with duplicate prevention
- Port configuration read from settings.json
- Type safety improvements prevent compile-time errors
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* refactor: Clean up hook-response and new-hook files
- Removed 'PreCompact' hook type and associated logic from hook-response.ts for improved type safety.
- Deleted extensive architecture comments in new-hook.ts to streamline code readability.
- Simplified debug logging in new-hook.ts to reduce verbosity.
- Enhanced ensureWorkerRunning function in worker-utils.ts with a final health check before throwing errors.
- Added a new documentation file outlining the hooks cleanup process and future improvements.
* Refactor cleanup and user message hooks
- Updated cleanup-hook.js to improve error handling and remove unnecessary input checks.
- Simplified user-message-hook.js by removing time-sensitive announcements and streamlining output.
- Enhanced logging functionality in both hooks for better debugging and clarity.
* Refactor error handling in hooks to use centralized error handler
- Introduced `handleWorkerError` function in `src/shared/hook-error-handler.ts` to manage worker-related errors.
- Updated `context-hook.ts`, `new-hook.ts`, `save-hook.ts`, and `summary-hook.ts` to utilize the new error handler, simplifying error management and improving code readability.
- Removed repetitive error handling logic from individual hooks, ensuring consistent user-friendly messages for connection issues.
* Refactor user-message and summary hooks to utilize shared transcript parser; introduce hook exit codes
- Moved user message extraction logic to a new shared module `transcript-parser.ts` for better code reuse.
- Updated `summary-hook.ts` to use the new `extractLastMessage` function for retrieving user and assistant messages.
- Replaced direct exit code usage in `user-message-hook.ts` with constants from `hook-constants.ts` for improved readability and maintainability.
- Added `HOOK_EXIT_CODES` to `hook-constants.ts` to standardize exit codes across hooks.
* Refactor hook input interfaces to enforce required fields
- Updated `SessionStartInput`, `UserPromptSubmitInput`, `PostToolUseInput`, and `StopInput` interfaces to require `session_id`, `transcript_path`, and `cwd` fields, ensuring better type safety and clarity in hook inputs.
- Removed optional index signatures from these interfaces to prevent unintended properties and improve code maintainability.
- Adjusted related hook implementations to align with the new interface definitions.
* Refactor save-hook to remove tool skipping logic; enhance summary-hook to handle spinner stopping with error logging; update SessionRoutes to load skip tools from settings; add CLAUDE_MEM_SKIP_TOOLS to SettingsDefaultsManager for configurable tool exclusion.
* Document CLAUDE_MEM_SKIP_TOOLS setting in public docs
Added documentation for the new CLAUDE_MEM_SKIP_TOOLS configuration
setting in response to PR review feedback. Users can now discover and
customize which tools are excluded from observations.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Sonnet 4.5 <noreply@anthropic.com>
**Problem:**
Worker service crashed on startup with:
TypeError: Cannot read properties of undefined (reading 'get')
at new Wd (.../worker-service.cjs:52:131469)
**Root Cause:**
Circular dependency between SettingsDefaultsManager and logger:
1. SettingsDefaultsManager imports logger
2. logger imports SettingsDefaultsManager
3. logger constructor calls SettingsDefaultsManager.get() at init time
4. When CommonJS resolves the cycle, SettingsDefaultsManager is undefined
**Solution:**
Break the circular dependency by making logger lazy-load its configuration:
- Change logger.level from initialized in constructor to lazy-loaded
- Add getLevel() method that loads on first access
- Update all level checks to use getLevel()
This allows SettingsDefaultsManager to import logger without triggering
the circular dependency, since logger no longer accesses SettingsDefaultsManager
during module initialization.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Moved SettingsDefaultsManager from worker/settings to shared directory.
- Updated all import paths across the codebase to reflect the new location.
- Removed early-settings.ts as its functionality is now handled by SettingsDefaultsManager.
- Adjusted logger and paths to utilize SettingsDefaultsManager for configuration values.
- Replaced instances of silentDebug with happy_path_error__with_fallback across multiple files to improve error logging and handling.
- Updated the utility function to provide clearer semantics for error handling when expected values are missing.
- Introduced a script to find potential silent failures in the codebase that may need to be addressed with the new error handling approach.
- Added silent debugging for settings file loading failures in early-settings.ts.
- Improved error logging in worker-utils.ts for health check and worker startup failures, including detailed error information and context.
- Updated paths in troubleshooting documentation to reflect new settings file location.
- Modified diagnostics and reference files to read from ~/.claude-mem/settings.json.
- Introduced getWorkerPort utility for cleaner worker port retrieval.
- Enhanced ChromaSync and SDKAgent to load Python version and Claude path from settings.
- Updated SettingsRoutes to validate new settings: CLAUDE_MEM_LOG_LEVEL and CLAUDE_MEM_PYTHON_VERSION.
- Added early-settings module to load settings for logger and other early-stage modules.
- Adjusted logger to use early-loaded log level setting.
- Refactored paths to utilize early-loaded data directory setting.
- Introduced SettingsDefaultsManager to centralize default settings and loading logic.
- Updated context-generator, SDKAgent, SettingsRoutes, and worker-utils to utilize the new manager for loading settings.
- Removed redundant code for reading settings from files and environment variables.
- Ensured fallback to default values when settings file is missing or invalid.
Created database.ts with proper database result types and replaced 38+ 'as any' casts throughout the codebase with proper type annotations.
Changes:
- Created src/types/database.ts with TableColumnInfo, IndexInfo, and database record types
- Fixed all type casts in SessionStore.ts (migrations, query results)
- Fixed type casts in SessionSearch.ts, SettingsManager.ts, SettingsRoutes.ts
- Improved MCP server JSON schema typing
All builds pass and worker service runs successfully.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Extracted SQL query from handleSessionInit route handler into SessionStore.getLatestUserPrompt()
method to fix abstraction leak and improve type safety.
Changes:
- Added getLatestUserPrompt() method to SessionStore with proper return type
- Replaced raw SQL query in SessionRoutes with type-safe method call
- Removed direct database access through dbManager.getSessionStore().db
- Improved separation of concerns (data layer vs HTTP layer)
Benefits:
- Type safety: Explicit return type instead of 'as any' cast
- Maintainability: SQL query logic belongs in data layer
- Testability: Can test query logic independently from HTTP layer
- Consistency: Follows existing pattern of query methods in SessionStore
Phase 3 Complete: SQL abstraction leak fixed in session init endpoint.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Major architectural improvements to the worker service:
- Extracted monolithic WorkerService (~1900 lines) into organized route classes
- New HTTP layer with dedicated route handlers:
- SessionRoutes: Session lifecycle operations
- DataRoutes: Data retrieval endpoints
- SearchRoutes: Search/MCP proxy operations
- SettingsRoutes: Settings and configuration
- ViewerRoutes: Health, UI, and SSE streaming
- Added comprehensive README documenting worker architecture
- Improved build script to handle worker service compilation
- Added context-generator for hook context operations
This is Phase 1 of worker refactoring - pure code reorganization with zero
functional changes. All existing behavior preserved while improving
maintainability and code organization.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
