fix: hook version tracking, stale hook detection, stdin timeout, and session-report command (#1153, #1157, #1161, #1162) (#1163)

* fix: hook version tracking, stale hook detection, and stdin timeout increase

- Add gsd-hook-version header to all hook files for version tracking (#1153)
- Install.js now stamps current version into hooks during installation
- gsd-check-update.js detects stale hooks by comparing version headers
- gsd-statusline.js shows warning when stale hooks are detected
- Increase context monitor stdin timeout from 3s to 10s (#1162)
- Set +x permission on hook files during installation (#1162)

Fixes #1153, #1162, #1161

* feat: add /gsd:session-report command for post-session summary generation

Adds a new command that generates SESSION_REPORT.md with:
- Work performed summary (phases touched, commits, files changed)
- Key outcomes and decisions made
- Active blockers and open items
- Estimated resource usage metrics

Reports are written to .planning/reports/ with date-stamped filenames.

Closes #1157

* test: update expected skill count from 39 to 40 for new session-report command

bin/install.js

@@ -2606,10 +2606,14 @@ function install(isGlobal, runtime = 'claude') {
         if (fs.statSync(srcFile).isFile()) {
           const destFile = path.join(hooksDest, entry);
           // Template .js files to replace '.claude' with runtime-specific config dir
+          // and stamp the current GSD version into the hook version header
           if (entry.endsWith('.js')) {
             let content = fs.readFileSync(srcFile, 'utf8');
             content = content.replace(/'\.claude'/g, configDirReplacement);
+            content = content.replace(/\{\{GSD_VERSION\}\}/g, pkg.version);
             fs.writeFileSync(destFile, content);
+            // Ensure hook files are executable (fixes #1162 — missing +x permission)
+            try { fs.chmodSync(destFile, 0o755); } catch (e) { /* Windows doesn't support chmod */ }
           } else {
             fs.copyFileSync(srcFile, destFile);
           }

commands/gsd/session-report.md

@@ -0,0 +1,19 @@
+---
+name: gsd:session-report
+description: Generate a session report with token usage estimates, work summary, and outcomes
+allowed-tools:
+  - Read
+  - Bash
+  - Write
+---
+<objective>
+Generate a structured SESSION_REPORT.md document capturing session outcomes, work performed, and estimated resource usage. Provides a shareable artifact for post-session review.
+</objective>
+
+<execution_context>
+@~/.claude/get-shit-done/workflows/session-report.md
+</execution_context>
+
+<process>
+Execute the session-report workflow from @~/.claude/get-shit-done/workflows/session-report.md end-to-end.
+</process>

get-shit-done/workflows/session-report.md

@@ -0,0 +1,146 @@
+<purpose>
+Generate a post-session summary document capturing work performed, outcomes achieved, and estimated resource usage. Writes SESSION_REPORT.md to .planning/reports/ for human review and stakeholder sharing.
+</purpose>
+
+<required_reading>
+Read all files referenced by the invoking prompt's execution_context before starting.
+</required_reading>
+
+<process>
+
+<step name="gather_session_data">
+Collect session data from available sources:
+
+1. **STATE.md** — current phase, milestone, progress, blockers, decisions
+2. **Git log** — commits made during this session (last 24h or since last report)
+3. **Plan/Summary files** — plans executed, summaries written
+4. **ROADMAP.md** — milestone context and phase goals
+
+```bash
+# Get recent commits (last 24 hours)
+git log --oneline --since="24 hours ago" --no-merges 2>/dev/null || echo "No recent commits"
+
+# Count files changed
+git diff --stat HEAD~10 HEAD 2>/dev/null | tail -1 || echo "No diff available"
+```
+
+Read `.planning/STATE.md` to get:
+- Current milestone and phase
+- Progress percentage
+- Active blockers
+- Recent decisions
+
+Read `.planning/ROADMAP.md` to get milestone name and goals.
+
+Check for existing reports:
+```bash
+ls -la .planning/reports/SESSION_REPORT*.md 2>/dev/null || echo "No previous reports"
+```
+</step>
+
+<step name="estimate_usage">
+Estimate token usage from observable signals:
+
+- Count of tool calls is not directly available, so estimate from git activity and file operations
+- Note: This is an **estimate** — exact token counts require API-level instrumentation not available to hooks
+
+Estimation heuristics:
+- Each commit ≈ 1 plan cycle (research + plan + execute + verify)
+- Each plan file ≈ 2,000-5,000 tokens of agent context
+- Each summary file ≈ 1,000-2,000 tokens generated
+- Subagent spawns multiply by ~1.5x per agent type used
+</step>
+
+<step name="generate_report">
+Create the report directory and file:
+
+```bash
+mkdir -p .planning/reports
+```
+
+Write `.planning/reports/SESSION_REPORT.md` (or `.planning/reports/YYYYMMDD-session-report.md` if previous reports exist):
+
+```markdown
+# GSD Session Report
+
+**Generated:** [timestamp]
+**Project:** [from PROJECT.md title or directory name]
+**Milestone:** [N] — [milestone name from ROADMAP.md]
+
+---
+
+## Session Summary
+
+**Duration:** [estimated from first to last commit timestamp, or "Single session"]
+**Phase Progress:** [from STATE.md]
+**Plans Executed:** [count of summaries written this session]
+**Commits Made:** [count from git log]
+
+## Work Performed
+
+### Phases Touched
+[List phases worked on with brief description of what was done]
+
+### Key Outcomes
+[Bullet list of concrete deliverables: files created, features implemented, bugs fixed]
+
+### Decisions Made
+[From STATE.md decisions table, if any were added this session]
+
+## Files Changed
+
+[Summary of files modified, created, deleted — from git diff stat]
+
+## Blockers & Open Items
+
+[Active blockers from STATE.md]
+[Any TODO items created during session]
+
+## Estimated Resource Usage
+
+| Metric | Estimate |
+|--------|----------|
+| Commits | [N] |
+| Files changed | [N] |
+| Plans executed | [N] |
+| Subagents spawned | [estimated] |
+
+> **Note:** Token and cost estimates require API-level instrumentation.
+> These metrics reflect observable session activity only.
+
+---
+
+*Generated by `/gsd:session-report`*
+```
+</step>
+
+<step name="display_result">
+Show the user:
+
+```
+## Session Report Generated
+
+📄 `.planning/reports/[filename].md`
+
+### Highlights
+- **Commits:** [N]
+- **Files changed:** [N]  
+- **Phase progress:** [X]%
+- **Plans executed:** [N]
+```
+
+If this is the first report, mention:
+```
+💡 Run `/gsd:session-report` at the end of each session to build a history of project activity.
+```
+</step>
+
+</process>
+
+<success_criteria>
+- [ ] Session data gathered from STATE.md, git log, and plan files
+- [ ] Report written to .planning/reports/
+- [ ] Report includes work summary, outcomes, and file changes
+- [ ] Filename includes date to prevent overwrites
+- [ ] Result summary displayed to user
+</success_criteria>

hooks/gsd-check-update.js

@@ -1,4 +1,5 @@
 #!/usr/bin/env node
+// gsd-hook-version: {{GSD_VERSION}}
 // Check for GSD updates in background, write result to cache
 // Called by SessionStart hook - runs once per session
 
@@ -43,6 +44,7 @@ if (!fs.existsSync(cacheDir)) {
 // Run check in background (spawn background process, windowsHide prevents console flash)
 const child = spawn(process.execPath, ['-e', `
   const fs = require('fs');
+  const path = require('path');
   const { execSync } = require('child_process');
 
   const cacheFile = ${JSON.stringify(cacheFile)};
@@ -51,14 +53,43 @@ const child = spawn(process.execPath, ['-e', `
 
   // Check project directory first (local install), then global
   let installed = '0.0.0';
+  let configDir = '';
   try {
     if (fs.existsSync(projectVersionFile)) {
       installed = fs.readFileSync(projectVersionFile, 'utf8').trim();
+      configDir = path.dirname(path.dirname(projectVersionFile));
     } else if (fs.existsSync(globalVersionFile)) {
       installed = fs.readFileSync(globalVersionFile, 'utf8').trim();
+      configDir = path.dirname(path.dirname(globalVersionFile));
     }
   } catch (e) {}
 
+  // Check for stale hooks — compare hook version headers against installed VERSION
+  let staleHooks = [];
+  if (configDir) {
+    const hooksDir = path.join(configDir, 'hooks');
+    try {
+      if (fs.existsSync(hooksDir)) {
+        const hookFiles = fs.readdirSync(hooksDir).filter(f => f.endsWith('.js'));
+        for (const hookFile of hookFiles) {
+          try {
+            const content = fs.readFileSync(path.join(hooksDir, hookFile), 'utf8');
+            const versionMatch = content.match(/\\/\\/ gsd-hook-version:\\s*(.+)/);
+            if (versionMatch) {
+              const hookVersion = versionMatch[1].trim();
+              if (hookVersion !== installed && !hookVersion.includes('{{')) {
+                staleHooks.push({ file: hookFile, hookVersion, installedVersion: installed });
+              }
+            } else {
+              // No version header at all — definitely stale (pre-version-tracking)
+              staleHooks.push({ file: hookFile, hookVersion: 'unknown', installedVersion: installed });
+            }
+          } catch (e) {}
+        }
+      }
+    } catch (e) {}
+  }
+
   let latest = null;
   try {
     latest = execSync('npm view get-shit-done-cc version', { encoding: 'utf8', timeout: 10000, windowsHide: true }).trim();
@@ -68,7 +99,8 @@ const child = spawn(process.execPath, ['-e', `
     update_available: latest && installed !== latest,
     installed,
     latest: latest || 'unknown',
-    checked: Math.floor(Date.now() / 1000)
+    checked: Math.floor(Date.now() / 1000),
+    stale_hooks: staleHooks.length > 0 ? staleHooks : undefined
   };
 
   fs.writeFileSync(cacheFile, JSON.stringify(result));

hooks/gsd-context-monitor.js

@@ -1,4 +1,5 @@
 #!/usr/bin/env node
+// gsd-hook-version: {{GSD_VERSION}}
 // Context Monitor - PostToolUse/AfterTool hook (Gemini uses AfterTool)
 // Reads context metrics from the statusline bridge file and injects
 // warnings when context usage is high. This makes the AGENT aware of
@@ -27,10 +28,11 @@ const STALE_SECONDS = 60;      // ignore metrics older than 60s
 const DEBOUNCE_CALLS = 5;      // min tool uses between warnings
 
 let input = '';
-// Timeout guard: if stdin doesn't close within 3s (e.g. pipe issues on
+// Timeout guard: if stdin doesn't close within 10s (e.g. pipe issues on
-// Windows/Git Bash), exit silently instead of hanging until Claude Code
+// Windows/Git Bash, or slow Claude Code piping during large outputs),
-// kills the process and reports "hook error". See #775.
+// exit silently instead of hanging until Claude Code kills the process
-const stdinTimeout = setTimeout(() => process.exit(0), 3000);
+// and reports "hook error". See #775, #1162.
+const stdinTimeout = setTimeout(() => process.exit(0), 10000);
 process.stdin.setEncoding('utf8');
 process.stdin.on('data', chunk => input += chunk);
 process.stdin.on('end', () => {

hooks/gsd-statusline.js

@@ -1,4 +1,5 @@
 #!/usr/bin/env node
+// gsd-hook-version: {{GSD_VERSION}}
 // Claude Code Statusline - GSD Edition
 // Shows: model | current task | directory | context usage
 
@@ -99,6 +100,9 @@ process.stdin.on('end', () => {
         if (cache.update_available) {
           gsdUpdate = '\x1b[33m⬆ /gsd:update\x1b[0m │ ';
         }
+        if (cache.stale_hooks && cache.stale_hooks.length > 0) {
+          gsdUpdate += '\x1b[31m⚠ stale hooks — run /gsd:update\x1b[0m │ ';
+        }
       } catch (e) {}
     }