* fix(#2633): use ROADMAP.md as authority for current-milestone phase counts
initMilestoneOp (SDK + CJS) derives phase_count and completed_phases from
the current milestone section of ROADMAP.md instead of counting on-disk
`.planning/phases/` directories. After `phases clear` at the start of a new
milestone the on-disk set is a subset of the roadmap, causing premature
`all_phases_complete: true`.
validateHealth W002 now unions ROADMAP.md phase declarations (all milestones
— current, shipped, backlog) with on-disk dirs when checking STATE.md phase
refs. Eliminates false positives for future-phase refs in the current
milestone and history-phase refs from shipped milestones.
Falls back to legacy on-disk counting when ROADMAP.md is missing or
unparseable so no-roadmap fixtures still work.
Adds vitest regressions for both handlers; all 66 SDK + 118 CJS tests pass.
* fix(#2633): preserve full phase tokens in W002 + completion lookup
CodeRabbit flagged that the parseInt-based normalization collapses distinct
phase IDs (3, 3A, 3.1) into the same integer bucket, masking real
STATE/ROADMAP mismatches and miscounting completions in milestones with
inserted/sub-phases.
Index disk dirs and validate STATE.md refs by canonical full phase token —
strip leading zeros from the integer head only, preserve [A-Z] suffix and
dotted segments, and accept just the leading-zero variant of the integer
prefix as a tolerated alias. 3A and 3 never share a bucket.
Also widens the disk and STATE.md regexes to accept [A-Z]? suffix tokens.
* feat(sdk): add typed query foundation and gsd-sdk query (Phase 1)
Add sdk/src/query registry and handlers with tests, GSDQueryError, CLI query wiring, and supporting type/tool-scoping hooks. Update CHANGELOG. Vitest 4 constructor mock fixes in milestone-runner tests.
Made-with: Cursor
* fix(2137): skip worktree isolation when .gitmodules detected
When a project contains git submodules, worktree isolation cannot
correctly handle submodule commits — three separate gaps exist in
worktree setup, executor commit protocol, and merge-back. Rather
than patch each gap individually, detect .gitmodules at phase start
and fall back to sequential execution, which handles submodules
transparently (Option B).
Affected workflows: execute-phase.md, quick.md
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Co-authored-by: David Sienkowski <dave@sienkowski.com>
