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get-shit-done/docs/CLI-TOOLS.md
Logan fbf30792f3 docs: authoritative shipped-surface inventory with filesystem-backed parity tests (#2390) 
* docs: finish trust-bug fixes in user guide and commands

Correct load-bearing defects in the v1.36.0 docs corpus so readers stop
acting on wrong defaults and stale exhaustiveness claims.

- README.md: drop "Complete feature"/"Every command"/"All 18 agents"
  exhaustiveness claims; replace version-pinned "What's new in v1.32"
  bullet with a CHANGELOG pointer.
- CONFIGURATION.md: fix `claude_md_path` default (null/none -> `./CLAUDE.md`)
  in both Full Schema and core settings table; correct `workflow.tdd_mode`
  provenance from "Added in v1.37" to "Added in v1.36".
- USER-GUIDE.md: fix `workflow.discuss_mode` default (`standard` ->
  `discuss`) in the workflow-toggles table AND in the abbreviated Full
  Schema JSON block above it; align the Options cell with the shipped
  enum.
- COMMANDS.md: drop "Complete command syntax" subtitle overclaim to
  match the README posture.
- AGENTS.md: weaken "All 21 specialized agents" header to reflect that
  the `agents/` filesystem is authoritative (shipped roster is 31).

Part 1 of a stacked docs refresh series (PR 1/4).

* docs: refresh shipped surface coverage for v1.36

Close the v1.36.0 shipped-surface gaps in the docs corpus.

- COMMANDS.md: add /gsd-graphify section (build/query/status/diff) and
  its config gate; expand /gsd-quick with --validate flag and list/
  status/resume subcommands; expand /gsd-thread with list --open, list
  --resolved, close <slug>, status <slug>.
- CLI-TOOLS.md: replace the hardcoded "15 domain modules" count with a
  pointer to the Module Architecture table; add a graphify verb-family
  section (build/query/status/diff/snapshot); add Graphify and Learnings
  rows to the Module Architecture table.
- FEATURES.md: add TOC entries for #116 TDD Pipeline Mode and #117
  Knowledge Graph Integration; add the #117 body with REQ-GRAPH-01..05.
- CONFIGURATION.md: move security_enforcement / security_asvs_level /
  security_block_on from root into `workflow.*` in Full Schema to match
  templates/config.json and the gsd-sdk runtime reads; update Security
  Settings table to use the workflow.* prefix; add planning.sub_repos
  to Full Schema and description table; add a Graphify Settings section
  documenting graphify.enabled and graphify.build_timeout.

Note: VALID_CONFIG_KEYS in bin/lib/config.cjs does not yet include
workflow.security_* or planning.sub_repos, so config-set currently
rejects them. That is a pre-existing validator gap that this PR does
not attempt to fix; the docs now correctly describe where these keys
live per the shipped template and runtime reads.

Part 2 of a stacked docs refresh series (PR 2/5), based on PR 1.

* docs: make inventory authoritative and reconcile architecture

Upgrade docs/INVENTORY.md from "complete for agents, selective for others"
to authoritative across all six shipped-surface families, and reconcile
docs/ARCHITECTURE.md against the new inventory so the PR that introduces
INVENTORY does not also introduce an INVENTORY/ARCHITECTURE contradiction.

- docs/AGENTS.md: weaken "21 specialized agents" header to 21 primary +
  10 advanced (31 shipped); add new "Advanced and Specialized Agents"
  section with concise role cards for the 10 previously-omitted shipped
  agents (pattern-mapper, debug-session-manager, code-reviewer,
  code-fixer, ai-researcher, domain-researcher, eval-planner,
  eval-auditor, framework-selector, intel-updater); footnote the Agent
  Tool Permissions Summary as primary-agents-only so it no longer
  misleads.

- docs/INVENTORY.md (rewritten to be authoritative):
  * Full 31-agent roster with one-line role + spawner + primary-doc
    status per agent (unchanged from prior partial work).
  * Commands: full 75-row enumeration grouped by Core Workflow, Phase &
    Milestone Management, Session & Navigation, Codebase Intelligence,
    Review/Debug/Recovery, and Docs/Profile/Utilities — each row
    carries a one-line role derived from the command's frontmatter and
    a link to the source file.
  * Workflows: full 72-row enumeration covering every
    get-shit-done/workflows/*.md, with a one-line role per workflow and
    a column naming the user-facing command (or internal orchestrator)
    that invokes it.
  * References: full 41-row enumeration grouped by Core, Workflow,
    Thinking-Model clusters, and the Modular Planner decomposition,
    matching the groupings docs/ARCHITECTURE.md already uses; notes
    the few-shot-examples subdirectory separately.
  * CLI Modules and Hooks: unchanged — already full rosters.
  * Maintenance section rewritten to describe the drift-guard test
    suite that will land in PR4 (inventory-counts, commands-doc-parity,
    agents-doc-parity, cli-modules-doc-parity, hooks-doc-parity).

- docs/ARCHITECTURE.md reconciled against INVENTORY:
  * References block: drop the stale "(35 total)" count; point at
    INVENTORY.md#references-41-shipped for the authoritative count.
  * CLI Tools block: drop the stale "19 domain modules" count; point
    at INVENTORY.md#cli-modules-24-shipped for the authoritative roster.
  * Agent Spawn Categories: relabel as "Primary Agent Spawn Categories"
    and add a footer naming the 10 advanced agents and pointing at
    INVENTORY.md#agents-31-shipped for the full 31-agent roster.

- docs/CONFIGURATION.md: preserve the six model-profile rows added in
  the prior partial work, and tighten the fallback note so it names the
  13 shipped agents without an explicit profile row, documents
  model_overrides as the escape hatch, and points at INVENTORY.md for
  the authoritative 31-agent roster.

Part 3 of a stacked docs refresh series (PR 3/4). Remaining consistency
work (USER-GUIDE config-section delete-and-link, FEATURES.md TOC
reorder, ARCHITECTURE.md Hook-table expansion + installation-layout
collapse, CLI-TOOLS.md module-row additions, workflow-discuss-mode
invocation normalization, and the five doc-parity tests) lands in PR4.

* test(docs): add consistency guards and remove duplicate refs

Consolidates USER-GUIDE.md's command/config duplicates into pointers to
COMMANDS.md and CONFIGURATION.md (kills a ghost `resolve_model_ids` key
and a stale `discuss_mode: standard` default); reorders FEATURES.md TOC
chronologically so v1.32 precedes v1.34/1.35/1.36; expands
ARCHITECTURE.md's Hook table to the 11 shipped hooks
(gsd-read-injection-scanner, gsd-check-update-worker) and collapses
the installation-layout hook enumeration to the *.js/*.sh pattern form;
adds audit/gsd2-import/intel rows and state signal-*, audit-open,
from-gsd2 verbs to CLI-TOOLS.md; normalizes workflow-discuss-mode.md
invocations to `node gsd-tools.cjs config-set`.

Adds five drift guards anchored on docs/INVENTORY.md as the
authoritative roster: inventory-counts (all six families),
commands/agents/cli-modules/hooks parity checks that every shipped
surface has a row somewhere.

* fix(convergence): thread --ws to review agent; add stall and max-cycles behavioral tests

- Thread GSD_WS through to review agent spawn in plan-review-convergence
  workflow (step 5a) so --ws scoping is symmetric with planning step
- Add behavioral stall detection test: asserts workflow compares
  HIGH_COUNT >= prev_high_count and emits a stall warning
- Add behavioral --max-cycles 1 test: asserts workflow reaches escalation
  gate when cycle >= MAX_CYCLES with HIGH > 0 after a single cycle
- Include original PR files (commands, workflow, tests) as the branch
  predated the PR commits

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(docs,config): PR #2390 review — security_* config keys and REQ-GRAPH-02 scope

Addresses trek-e's review items that don't require rebase:

- config.cjs: add workflow.security_enforcement, workflow.security_asvs_level,
  workflow.security_block_on to VALID_CONFIG_KEYS so gsd-sdk config-set accepts
  them (closed the gap where docs/CONFIGURATION.md listed keys the validator
  rejected).
- core.cjs: add matching CONFIG_DEFAULTS entries (true / 1 / 'high') so the
  canonical defaults table matches the documented values.
- config.cjs: wire the three keys into the new-project workflow defaults so
  fresh configs inherit them.
- planning-config.md: document the three keys in the Workflow Fields table,
  keeping the CONFIG_DEFAULTS ↔ doc parity test happy.
- config-field-docs.test.cjs: extend NAMESPACE_MAP so the flat keys in
  CONFIG_DEFAULTS resolve to their workflow.* doc rows.
- FEATURES.md REQ-GRAPH-02: split the slash-command surface (build|query|
  status|diff) from the CLI surface which additionally exposes `snapshot`
  (invoked automatically at the tail of `graphify build`). The prior text
  overstated the slash-command surface.

* docs(inventory): refresh rosters and counts for post-rebase drift

origin/main accumulated surfaces since this PR was authored:

- Agents: 31 → 33 (+ gsd-doc-classifier, gsd-doc-synthesizer)
- Commands: 76 → 82 (+ ingest-docs, ultraplan-phase, spike, spike-wrap-up,
  sketch, sketch-wrap-up)
- Workflows: 73 → 79 (same 6 names)
- References: 41 → 49 (+ debugger-philosophy, doc-conflict-engine,
  mandatory-initial-read, project-skills-discovery, sketch-interactivity,
  sketch-theme-system, sketch-tooling, sketch-variant-patterns)

Adds rows in the existing sub-groupings, introduces a Sketch References
subsection, and bumps all four headline counts. Roles are pulled from
source frontmatter / purpose blocks for each file. All 5 parity tests
(inventory-counts, agents-doc-parity, commands-doc-parity,
cli-modules-doc-parity, hooks-doc-parity) pass against this state —
156 assertions, 0 failures.

Also updates the 'Coverage note' advanced-agent count 10 → 12 and the
few-shot-examples footnote "41 top-level references" → "49" to keep the
file internally consistent.

* docs(agents): add advanced stubs for gsd-doc-classifier and gsd-doc-synthesizer

Both agents ship on main (spawned by /gsd-ingest-docs) but had no
coverage in docs/AGENTS.md. Adds the "advanced stub" entries (Role,
property table, Key behaviors) following the template used by the other
10 advanced/specialized agents in the same section.

Also updates the Agent Tool Permissions Summary scope note from
"10 advanced/specialized agents" to 12 to reflect the two new stubs.

* docs(commands): add entries for ingest-docs, ultraplan-phase, plan-review-convergence

These three commands ship on main (plan-review-convergence via trek-e's
4b452d29 commit on this branch) but had no user-facing section in
docs/COMMANDS.md — they lived only in INVENTORY.md. The commands-doc-parity
test already passes via INVENTORY, but the user-facing doc was missing
canonical explanations, argument tables, and examples.

- /gsd-plan-review-convergence → Core Workflow (after /gsd-plan-phase)
- /gsd-ultraplan-phase → Core Workflow (after plan-review-convergence)
- /gsd-ingest-docs → Brownfield (after /gsd-import, since both consume
  the references/doc-conflict-engine.md contract)

Content pulled from each command's frontmatter and workflow purpose block.

* test: remove redundant ARCHITECTURE.md count tests

tests/architecture-counts.test.cjs and tests/command-count-sync.test.cjs
were added when docs/ARCHITECTURE.md carried hardcoded counts for commands/
workflows/agents. With the PR #2390 cleanup, ARCHITECTURE.md no longer
owns those numbers — docs/INVENTORY.md does, enforced by
tests/inventory-counts.test.cjs (scans the same filesystem directories
with the same readdirSync filter).

Keeping these ARCHITECTURE-specific tests would re-introduce the hardcoded
counts they guard, defeating trek-e's review point. The single-source-of-
truth parity tests already catch the same drift scenarios.

Related: #2257 (the regression this replaced).

---------

Co-authored-by: Tom Boucher <trekkie@nomorestars.com>
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-20 09:31:34 -04:00

13 KiB
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GSD CLI Tools Reference

Programmatic API reference for gsd-tools.cjs. Used by workflows and agents internally. For user-facing commands, see Command Reference.

Overview

gsd-tools.cjs is a Node.js CLI utility that replaces repetitive inline bash patterns across GSD's ~50 command, workflow, and agent files. It centralizes: config parsing, model resolution, phase lookup, git commits, summary verification, state management, and template operations.

Preferred for new orchestration: Many of the same operations are available as gsd-sdk query <command> (see sdk/src/query/index.ts and docs/QUERY-HANDLERS.md). Use that in workflows and examples where the handler exists; keep node … gsd-tools.cjs for commands not yet in the registry (for example graphify) or when you need CJS-only flags.

Location: get-shit-done/bin/gsd-tools.cjs Modules: see the Module Architecture table; the get-shit-done/bin/lib/ directory is authoritative.

Usage:

node gsd-tools.cjs <command> [args] [--raw] [--cwd <path>]

Global Flags:

Flag Description
--raw Machine-readable output (JSON or plain text, no formatting)
--cwd <path> Override working directory (for sandboxed subagents)
--ws <name> Target a specific workstream context (SDK only)

State Commands

Manage .planning/STATE.md — the project's living memory.

# Load full project config + state as JSON
node gsd-tools.cjs state load

# Output STATE.md frontmatter as JSON
node gsd-tools.cjs state json

# Update a single field
node gsd-tools.cjs state update <field> <value>

# Get STATE.md content or a specific section
node gsd-tools.cjs state get [section]

# Batch update multiple fields
node gsd-tools.cjs state patch --field1 val1 --field2 val2

# Increment plan counter
node gsd-tools.cjs state advance-plan

# Record execution metrics
node gsd-tools.cjs state record-metric --phase N --plan M --duration Xmin [--tasks N] [--files N]

# Recalculate progress bar
node gsd-tools.cjs state update-progress

# Add a decision
node gsd-tools.cjs state add-decision --summary "..." [--phase N] [--rationale "..."]
# Or from files:
node gsd-tools.cjs state add-decision --summary-file path [--rationale-file path]

# Add/resolve blockers
node gsd-tools.cjs state add-blocker --text "..."
node gsd-tools.cjs state resolve-blocker --text "..."

# Record session continuity
node gsd-tools.cjs state record-session --stopped-at "..." [--resume-file path]

# Phase start — update STATE.md Status/Last activity for a new phase
node gsd-tools.cjs state begin-phase --phase N --name SLUG --plans COUNT

# Agent-discoverable blocker signalling (used by discuss-phase / UI flows)
node gsd-tools.cjs state signal-waiting --type TYPE --question "..." --options "A|B" --phase P
node gsd-tools.cjs state signal-resume

State Snapshot

Structured parse of the full STATE.md:

node gsd-tools.cjs state-snapshot

Returns JSON with: current position, phase, plan, status, decisions, blockers, metrics, last activity.

Phase Commands

Manage phases — directories, numbering, and roadmap sync.

# Find phase directory by number
node gsd-tools.cjs find-phase <phase>

# Calculate next decimal phase number for insertions
node gsd-tools.cjs phase next-decimal <phase>

# Append new phase to roadmap + create directory
node gsd-tools.cjs phase add <description>

# Insert decimal phase after existing
node gsd-tools.cjs phase insert <after> <description>

# Remove phase, renumber subsequent
node gsd-tools.cjs phase remove <phase> [--force]

# Mark phase complete, update state + roadmap
node gsd-tools.cjs phase complete <phase>

# Index plans with waves and status
node gsd-tools.cjs phase-plan-index <phase>

# List phases with filtering
node gsd-tools.cjs phases list [--type planned|executed|all] [--phase N] [--include-archived]

Roadmap Commands

Parse and update ROADMAP.md.

# Extract phase section from ROADMAP.md
node gsd-tools.cjs roadmap get-phase <phase>

# Full roadmap parse with disk status
node gsd-tools.cjs roadmap analyze

# Update progress table row from disk
node gsd-tools.cjs roadmap update-plan-progress <N>

Config Commands

Read and write .planning/config.json.

# Initialize config.json with defaults
node gsd-tools.cjs config-ensure-section

# Set a config value (dot notation)
node gsd-tools.cjs config-set <key> <value>

# Get a config value
node gsd-tools.cjs config-get <key>

# Set model profile
node gsd-tools.cjs config-set-model-profile <profile>

Model Resolution

# Get model for agent based on current profile
node gsd-tools.cjs resolve-model <agent-name>
# Returns: opus | sonnet | haiku | inherit

Agent names: gsd-planner, gsd-executor, gsd-phase-researcher, gsd-project-researcher, gsd-research-synthesizer, gsd-verifier, gsd-plan-checker, gsd-integration-checker, gsd-roadmapper, gsd-debugger, gsd-codebase-mapper, gsd-nyquist-auditor

Verification Commands

Validate plans, phases, references, and commits.

# Verify SUMMARY.md file
node gsd-tools.cjs verify-summary <path> [--check-count N]

# Check PLAN.md structure + tasks
node gsd-tools.cjs verify plan-structure <file>

# Check all plans have summaries
node gsd-tools.cjs verify phase-completeness <phase>

# Check @-refs + paths resolve
node gsd-tools.cjs verify references <file>

# Batch verify commit hashes
node gsd-tools.cjs verify commits <hash1> [hash2] ...

# Check must_haves.artifacts
node gsd-tools.cjs verify artifacts <plan-file>

# Check must_haves.key_links
node gsd-tools.cjs verify key-links <plan-file>

Validation Commands

Check project integrity.

# Check phase numbering, disk/roadmap sync
node gsd-tools.cjs validate consistency

# Check .planning/ integrity, optionally repair
node gsd-tools.cjs validate health [--repair]

Template Commands

Template selection and filling.

# Select summary template based on granularity
node gsd-tools.cjs template select <type>

# Fill template with variables
node gsd-tools.cjs template fill <type> --phase N [--plan M] [--name "..."] [--type execute|tdd] [--wave N] [--fields '{json}']

Template types for fill: summary, plan, verification

Frontmatter Commands

YAML frontmatter CRUD operations on any Markdown file.

# Extract frontmatter as JSON
node gsd-tools.cjs frontmatter get <file> [--field key]

# Update single field
node gsd-tools.cjs frontmatter set <file> --field key --value jsonVal

# Merge JSON into frontmatter
node gsd-tools.cjs frontmatter merge <file> --data '{json}'

# Validate required fields
node gsd-tools.cjs frontmatter validate <file> --schema plan|summary|verification

Scaffold Commands

Create pre-structured files and directories.

# Create CONTEXT.md template
node gsd-tools.cjs scaffold context --phase N

# Create UAT.md template
node gsd-tools.cjs scaffold uat --phase N

# Create VERIFICATION.md template
node gsd-tools.cjs scaffold verification --phase N

# Create phase directory
node gsd-tools.cjs scaffold phase-dir --phase N --name "phase name"

Init Commands (Compound Context Loading)

Load all context needed for a specific workflow in one call. Returns JSON with project info, config, state, and workflow-specific data.

node gsd-tools.cjs init execute-phase <phase>
node gsd-tools.cjs init plan-phase <phase>
node gsd-tools.cjs init new-project
node gsd-tools.cjs init new-milestone
node gsd-tools.cjs init quick <description>
node gsd-tools.cjs init resume
node gsd-tools.cjs init verify-work <phase>
node gsd-tools.cjs init phase-op <phase>
node gsd-tools.cjs init todos [area]
node gsd-tools.cjs init milestone-op
node gsd-tools.cjs init map-codebase
node gsd-tools.cjs init progress

# Workstream-scoped init (SDK --ws flag)
node gsd-tools.cjs init execute-phase <phase> --ws <name>
node gsd-tools.cjs init plan-phase <phase> --ws <name>

Large payload handling: When output exceeds ~50KB, the CLI writes to a temp file and returns @file:/tmp/gsd-init-XXXXX.json. Workflows check for the @file: prefix and read from disk:

INIT=$(node gsd-tools.cjs init execute-phase "1")
if [[ "$INIT" == @file:* ]]; then INIT=$(cat "${INIT#@file:}"); fi

Milestone Commands

# Archive milestone
node gsd-tools.cjs milestone complete <version> [--name <name>] [--archive-phases]

# Mark requirements as complete
node gsd-tools.cjs requirements mark-complete <ids>
# Accepts: REQ-01,REQ-02 or REQ-01 REQ-02 or [REQ-01, REQ-02]

Skill Manifest

Pre-compute and cache skill discovery for faster command loading.

# Generate skill manifest (writes to .claude/skill-manifest.json)
node gsd-tools.cjs skill-manifest

# Generate with custom output path
node gsd-tools.cjs skill-manifest --output <path>

Returns JSON mapping of all available GSD skills with their metadata (name, description, file path, argument hints). Used by the installer and session-start hooks to avoid repeated filesystem scans.

Utility Commands

# Convert text to URL-safe slug
node gsd-tools.cjs generate-slug "Some Text Here"
# → some-text-here

# Get timestamp
node gsd-tools.cjs current-timestamp [full|date|filename]

# Count and list pending todos
node gsd-tools.cjs list-todos [area]

# Check file/directory existence
node gsd-tools.cjs verify-path-exists <path>

# Aggregate all SUMMARY.md data
node gsd-tools.cjs history-digest

# Extract structured data from SUMMARY.md
node gsd-tools.cjs summary-extract <path> [--fields field1,field2]

# Project statistics
node gsd-tools.cjs stats [json|table]

# Progress rendering
node gsd-tools.cjs progress [json|table|bar]

# Complete a todo
node gsd-tools.cjs todo complete <filename>

# UAT audit — scan all phases for unresolved items
node gsd-tools.cjs audit-uat

# Cross-artifact audit queue — scan `.planning/` for unresolved audit items
node gsd-tools.cjs audit-open [--json]

# Reverse-migrate a GSD-2 project into the current structure (backs `/gsd-from-gsd2`)
node gsd-tools.cjs from-gsd2 [--path <dir>] [--force] [--dry-run]

# Git commit with config checks
node gsd-tools.cjs commit <message> [--files f1 f2] [--amend] [--no-verify]

--no-verify: Skips pre-commit hooks. Used by parallel executor agents during wave-based execution to avoid build lock contention (e.g., cargo lock fights in Rust projects). The orchestrator runs hooks once after each wave completes. Do not use --no-verify during sequential execution — let hooks run normally.

Web search (requires Brave API key)

node gsd-tools.cjs websearch [--limit N] [--freshness day|week|month]


---

## Graphify

Build, query, and inspect the project knowledge graph in `.planning/graphs/`. Requires `graphify.enabled: true` in `config.json` (see [Configuration Reference](CONFIGURATION.md#graphify-settings)). Graphify is **CJS-only**: `gsd-sdk query` does not yet register graphify handlers — always use `node gsd-tools.cjs graphify …`.

```bash
# Build or rebuild the knowledge graph
node gsd-tools.cjs graphify build

# Search the graph for a term
node gsd-tools.cjs graphify query <term>

# Show graph freshness and statistics
node gsd-tools.cjs graphify status

# Show changes since the last build
node gsd-tools.cjs graphify diff

# Write a named snapshot of the current graph
node gsd-tools.cjs graphify snapshot [name]

User-facing entry point: /gsd-graphify (see Command Reference).

Module Architecture

Module File Exports
Core lib/core.cjs error(), output(), parseArgs(), shared utilities
State lib/state.cjs All state subcommands, state-snapshot
Phase lib/phase.cjs Phase CRUD, find-phase, phase-plan-index, phases list
Roadmap lib/roadmap.cjs Roadmap parsing, phase extraction, progress updates
Config lib/config.cjs Config read/write, section initialization
Verify lib/verify.cjs All verification and validation commands
Template lib/template.cjs Template selection and variable filling
Frontmatter lib/frontmatter.cjs YAML frontmatter CRUD
Init lib/init.cjs Compound context loading for all workflows
Milestone lib/milestone.cjs Milestone archival, requirements marking
Commands lib/commands.cjs Misc: slug, timestamp, todos, scaffold, stats, websearch
Model Profiles lib/model-profiles.cjs Profile resolution table
UAT lib/uat.cjs Cross-phase UAT/verification audit
Profile Output lib/profile-output.cjs Developer profile formatting
Profile Pipeline lib/profile-pipeline.cjs Session analysis pipeline
Graphify lib/graphify.cjs Knowledge graph build/query/status/diff/snapshot (backs /gsd-graphify)
Learnings lib/learnings.cjs Extract learnings from phases/SUMMARY artifacts (backs /gsd-extract-learnings)
Audit lib/audit.cjs Phase/milestone audit queue handlers; audit-open helper
GSD2 Import lib/gsd2-import.cjs Reverse-migration importer from GSD-2 projects (backs /gsd-from-gsd2)
Intel lib/intel.cjs Queryable codebase intelligence index (backs /gsd-intel)
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